张宇辰

      姓 名: 张宇辰

  职 称: 讲师

  办公室: 信息工程学院 411

  邮 箱: yczhang@nwafu.edu.cn

           QQ:   2542371280

  

基本信息

      张宇辰,陕西西安人,于2022年12月在陕西师范大学获工学博士学位(硕博连读),同年进入西北农林科技大学信息工程学院工作,于2021-2022年在加拿大University of Saskatchewan,生物医学工程系进行博士联合培养。在《Knowledge-Based Systems》、《Frontiers in Pharmacology》、《Information Sciences》、《Briefings in Bioinformatics》、《Big Data Mining and Analytics》等期刊上发表研究性论文多篇,主持陕西省科技计划青年项目1项,中央高校基本科研业务费项目2项,参与国家自然科学基金项目4项,省部级项目3项,撰写英文专著章节2章,授权专利2项。任中国自动化学会智能健康与生物信息专业委员会委员,CCF生物信息学“新未来”青年学者研讨会执行委员、CCF会员、ACM会员、《Frontiers in Pharmacology》、《BMC Bioinformatics》、《Chinese Journal of Electronics》期刊审稿人,IEEE International Conference on Bioinformatics and Biomedicine (BIBM)、International Conference on Swarm Intelligence (ICSI)、International Conference on Data Mining and Big Data (DMBD)会议PC等。


Google Scholar: https://scholar.google.com.hk/citations?user=aXG0kK8AAAAJ&hl=zh-CN

ResearchGate: https://www.researchgate.net/profile/Yuchen-Zhang-51



研究方向

     生物信息学、深度学习、智能计算等。


科研成果

期刊论文:

[1]      Yuchen Zhang, Xiujuan Lei*, Cai Dai, Fang-Xiang Wu, Yi Pan. Identify Potential CircRNA-Disesase Associations Through Multi-Objective Evolutionary Algorithm. Information Sciences, 2023, vol.647, pp.119437. (SCI, 中国科学院一区, Top, IF:8.100)

[2]      Yuchen Zhang, Xiujuan Lei*, Yi Pan and Witold Pedrycz. Prediction of disease-associated circRNAs via circRNA–disease pair graph and weighted nuclear norm minimization. Knowledge-Based Systems, 2021, vol. 214, pp.106694. (SCI, 中国科学院一区, Top, IF: 8.038)

[3]      Yuchen Zhang, Xiujuan Lei*, Yi Pan, Fang-Xiang Wu. Drug Repositioning with GraphSAGE and Clustering Constraints Based on Drug and Disease Networks. Frontiers in Pharmacology, 2022, vol. 13, pp. 872785(SCI, 中国科学院二区, Top, IF: 5.810)

[4]      Yuchen Zhang, Xiujuan Lei*, Zengqiang Fang and Yi Pan*. CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization. Big Data Mining and Analytics, 2020, vol. 3, no. 4, pp. 280-291. (SCI, 2023年中国科学院一区, CCF T2期刊, IF:13.60 )

[5]      Xiujuan Lei* and Yuchen Zhang. Predicting disease-genes based on network information loss and protein complexes in heterogeneous network. Information Sciences, 2019, vol. 479, pp. 386-400. (SCI, 中国科学院一区 Top, IF: 8.233)

[6]      Xiujuan Lei*, Yuchen Zhang, Shi Cheng, Fang-Xiang Wu and Witold Pedrycz. Topology potential based seed-growth method to identify protein complexes on dynamic PPI data. Information Sciences, 2018, vol. 425, pp. 140-153. (SCI, 中国科学院一区 Top, IF: 8.233)

[7]      Yi Pan*, Xiujaun Lei* and Yuchen Zhang. Association predictions of genomics, proteinomics, transcriptomics, microbiome, metabolomics, pathomics, radiomics, drug, symptoms, environment factor, and disease networks: a comprehensive approach. Medicinal Research Reviews, 2022, vol. 42, no. 1, pp. 441-461 (SCI, 中国科学院一区 Top, IF:12.944) (该论文在2023年深圳市第三届优秀科技学术论文成果遴选中,获评优秀)

[8]      Xiujuan Lei, Thosini Bamunu Mudiyanselage, Yuchen Zhang, Chen Bian, Wei Lan, Ning Yu and Yi Pan*. A comprehensive survey on computational methods of non-coding RNA and disease association prediction. Briefings in Bioinformatics, 2021, vol. 22, no. 4, pp. bbaa350. (SCI, 中国科学院二区, IF:11.622)

[9]      Chunyan Fan, Xiujuan Lei*, Jiaojiao Tie, Yuchen Zhang, Fang-Xiang Wu and Yi Pan. CircR2Disease v2.0: An Updated Web Server for Experimentally Supported CircRNA-Disease Associations and Its Application. Genomics Proteomics & Bioinformatics, 2022, 20(3): 435-445 (SCI, 中国科学院二区, IF: 9.500)

[10]    Jianping Liu, Xiujuan Lei*, Yuchen Zhang, Yi Pan. The prediction of molecular toxicity based on BiGRU and GraphSAGE. Computers in Biology and Medicine. 2023, 153:106524 (SCI, 中国科学院二区, IF: 7.700)


会议论文:

[1]      Yuchen Zhang, Xiujuan Lei* and Shi. Cheng. PDG-PIO: Predicting Disease-genes Based on Pigeon-inspired Optimization. 2019 IEEE Congress on Evolutionary Computation (CEC), Jun. 2019, Wellington, New Zealand, pp. 3285-3291. (EI: 20193507373658)

[2]      Yuchen Zhang, Xiujuan Lei* and Ying Tan. Firefly clustering method for mining protein complexes. 2017 International Conference on Swarm Intelligence (ICSI), Aug. 2017, Fukuoka, Japan, Lecture Notes in Computer Science, vol. 10385, Springer, pp.601-610. (EI: 20173204020709)

[3]      Yuchen Zhang, Xiujuan Lei* and Ying Tan. Detecting Firefly Algorithm for Numerical Optimization. 2016 International Conference on Swarm Intelligence (ICSI), Jun. 2016, Bali, Indonesia, Lecture Notes in Computer Science, vol. 9712, Springer, pp. 200-210. (EI: 20170203229360)

[4]      Xiujuan Lei*, Yuchen Zhang, Fang-Xiang Wu and Aidong Zhang. Mining protein complexes based on topology potential from weighted dynamic PPI network. 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Dec. 2016, Shenzhen, China, pp. 735-738. ( CCF B类会议, EI: 20170803377750)


专著章节:

[1]      Yuchen Zhang, Xiujuan Lei* and Ying Tan. Application of fireworks algorithm in bioinformatics, in 《Handbook of Research on Fireworks Algorithms and Swarm Intelligence》, book edited by Ying Tan, IGI Global, USA, Apr.2020, pp.233-262. (Invited Book Chapter), ISBN13: 978-1-79981-659-1.

[2]      Xiujuan. Lei*, Yuchen Zhang, Jie Zhao, Shi Cheng and Ying Tan. Firefly algorithm and its applications, in《Swarm Intelligence: Innovation, New Algorithms and Methods》, book edited by Ying Tan, IET, London, United Kingdom, Aug.2018, pp.221-250. (Invited Book Chapter), ISBN: 978-1-78561-629-7.

[3]      Yulian Ding, Fei Wang, Yuchen Zhang, Fangxiang Wu. Negative Sample Selection for miRNA-Disease Association Prediction Models, in《Machine Learning Methods for Multi-Omics Data Integration》, book edited by Alkhateeb, A., Rueda, L., Springer, Cham, Jul.2023, pp.75-90. (Invited Book Chapter), ISBN: 978-3-031-36501-0.


主持参与的项目
  • 陕西省自然科学基础研究计划一般项目(青年项目):基于多组学知识图Transformer与疾病非编码RNA的药物重定位预测方法研究,2024JC-YBQN-0645,2024.01-2025.12,主持

  • 西北农林科技大学博士科研启动经费 :基于图嵌入学习的药物重定位与组合药物发现研究,2023.03-2026.03主持

  • 国家自然科学基金面上项目:基于计算方法的circRNA功能挖掘及其与复杂疾病的关系预测研究,2020.01-2023.12,参与

  • 国家自然科学基金面上项目:动态蛋白质网络复合物识别方法研究及其应用,2017.01-2020.12,参与

  • 国家自然科学基金青年科学基金项目:基于数据驱动的发展式头脑风暴优化算法研究,2019.01-2021.12,参与


开设课程
    软件体系结构、软件过程管理、农业大数据采集与处理


毕业学生
     如有对生物信息学、深度学习方向感兴趣的同学,欢迎联系。


张宇辰 白底照片.jpg

Name:Yuchen Zhang

Professional Title: Lecturer

Office:College of Information Engineering 411

Email: yczhang@nwafu.edu.cn


Personal Information

  Zhang Yuchen, a native of Xi 'an, received his Ph.D. degree in engineering from Shaanxi Normal University in 2022. He is currently working at the College of Information Engineering, Northwest A&F University. He participated in the PhD co-training at the University of Saskatchewan, Canada, in 2021-2022. He has published many research papers in journals, presided over 2 projects of Fundamental Research Funds for the Central Universities, participated in 4 projects of National Natural Science Foundation of China, and 3 projects of provincial and ministerial level. He has written 2 chapters of monographs and authorized 2 patents. He is a member of the Intelligent Health and Bioinformatics Committee of the Chinese Society of Automation, and an executive member of the CCF Bioinformatics "New Future" Young Scholars Seminar. He is also a reviewer for the journals Frontiers in Pharmacology, BMC Bioinformatics, and Chinese Journal of Electronics. He also served as a PC for IEEE International Conference on Bioinformatics and Biomedicine (BIBM), International Conference on Swarm Intelligence (ICSI), International Conference on Data Mining and Big Data (DMBD), and other conferences.


Google Scholar: https://scholar.google.com.hk/citations?user=aXG0kK8AAAAJ&hl=zh-CN

ResearchGate: https://www.researchgate.net/profile/Yuchen-Zhang-51




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